The Wayne County Historical Museum is in the Rollie Ley mansion, also known as the Wightman House, at 702 Lincoln Street, which was listed on the National Register of Historic Places in 1978.

The Wellfleet Old Post Office Museum is a local history museum in the village's old post office building at 532 Nile Avenue in Wellfleet.

Wheeler County Historical Society, Courthouse Museum is a museum located in Bartlett, Nebraska. Listed via the Nebraska Museums Association directory.

The Wilber Czech Museum, operated by Nebraska Czechs of Wilber, preserves the artifacts, traditions, and heritage of the Czech pioneer settlers who founded Wilber, known as the "Czech Capital of the.

The house where Willa Cather lived from 1884 to 1890, a National Historic Landmark; guided tours from the National Willa Cather Center.

Winnebago Historical Society is a museum located in Winnebago, Nebraska. Listed via the Nebraska Museums Association directory.

Wisner Heritage Museum Society is a museum located in Wisner, Nebraska. Listed via the Nebraska Museums Association directory.

York Area Children's Museum is located inside the York City Auditorium.

Yutan Historical Society is a museum located in Yutan, Nebraska. Listed via the Nebraska Museums Association directory.